PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21420_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 196aa    MW: 22401.8 Da    PI: 10.204
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21420_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000547391523
                                         TTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  5 dCgksFsrksnLkrHirtH 23
                                         +C+k F r+ nL+ H r H
  cra_locus_21420_iso_1_len_740_ver_3 73 ICNKGFQRHQNLQLHVRGH 91
                                         8***************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-47391IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSSSIXGDGR VERLSTSSRI NGDQEEDHKL DLDGSTSNRT EKIRRNNPTD PNVEVIALSP  60
KTLMAANRFF WEICNKGFQR HQNLQLHVRG HNLPSKLRQK TSKSESKKQV YICPGTSCVL  120
HNPARALADF TGMKKHYSWK HRERKWKGEK CSKRYAVQSD WKVHTETCGD KEYKCDCGTI  180
FSRRXIGSSG IQNPNA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344640.11e-71PREDICTED: protein indeterminate-domain 12-like
RefseqXP_012444978.12e-71PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ64e-70IDD2_ARATH; Protein indeterminate-domain 2
SwissprotQ8RWX75e-70IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
SwissprotQ8GYC11e-69IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0V0I7782e-71A0A0V0I778_SOLCH; Putative zinc finger protein JACKDAW-like
TrEMBLA0A0D2TSX83e-71A0A0D2TSX8_G
STRINGGLYMA19G39640.27e-70(Glycine max)
STRINGSolyc01g099340.2.12e-70(Solanum lycopersicum)